Package: diceR 2.2.0
diceR: Diverse Cluster Ensemble in R
Performs cluster analysis using an ensemble clustering framework, Chiu & Talhouk (2018) <doi:10.1186/s12859-017-1996-y>. Results from a diverse set of algorithms are pooled together using methods such as majority voting, K-Modes, LinkCluE, and CSPA. There are options to compare cluster assignments across algorithms using internal and external indices, visualizations such as heatmaps, and significance testing for the existence of clusters.
Authors:
diceR_2.2.0.tar.gz
diceR_2.2.0.zip(r-4.5)diceR_2.2.0.zip(r-4.4)diceR_2.2.0.zip(r-4.3)
diceR_2.2.0.tgz(r-4.4-x86_64)diceR_2.2.0.tgz(r-4.4-arm64)diceR_2.2.0.tgz(r-4.3-x86_64)diceR_2.2.0.tgz(r-4.3-arm64)
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diceR.pdf |diceR.html✨
diceR/json (API)
NEWS
# Install 'diceR' in R: |
install.packages('diceR', repos = c('https://alinetalhouk.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/alinetalhouk/dicer/issues
- hgsc - Gene expression data for High Grade Serous Carcinoma from TCGA
Last updated 10 months agofrom:2c6d23bdb6. Checks:OK: 9. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 18 2024 |
R-4.5-win-x86_64 | OK | Oct 18 2024 |
R-4.5-linux-x86_64 | OK | Oct 18 2024 |
R-4.4-win-x86_64 | OK | Oct 18 2024 |
R-4.4-mac-x86_64 | OK | Oct 18 2024 |
R-4.4-mac-aarch64 | OK | Oct 18 2024 |
R-4.3-win-x86_64 | OK | Oct 18 2024 |
R-4.3-mac-x86_64 | OK | Oct 18 2024 |
R-4.3-mac-aarch64 | OK | Oct 18 2024 |
Exports:asrscompactnessconsensus_clusterconsensus_combineconsensus_evaluateconsensus_matrixCSPActsdiceev_confmatev_nmigraph_allgraph_cdfgraph_delta_areagraph_heatmapgraph_trackingimpute_knnimpute_missingk_modesLCALCEmajority_votingmin_fnormPACpcn_selectpcn_simulateprepare_datarelabel_classsigclustsrs
Dependencies:abindade4assertthatbase64encBiobaseBiocGenericsBiocManagerbitbit64bslibcachemclassclassIntclicliprclueclusterclusterSimclvclValidcodetoolscolorspacecombinatcommonmarkcpp11crayondigestdoParalleldplyre1071fansifarverfastmapfontawesomeforcatsforeachfsgenericsggplot2gluegridBasegtablegtoolshardhathavenhighrhmshtmltoolshttpuvinfotheoisobanditeratorsjquerylibjsonliteKernSmoothklaRlabelinglabelledlaterlatticelifecyclemagrittrMASSMatrixmclustmemoisemgcvmimeminiUImunsellnlmeNMFpillarpixmappkgconfigplyrprettyunitsprogresspromisesproxypurrrquestionrR.cacheR.methodsS3R.ooR.utilsR6RankAggregrappdirsRColorBrewerRcppRcppArmadilloreadrregistryreshape2rlangrngtoolsrprojrootrstudioapisassscalesshinysourcetoolsspstringistringrstylertibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithrxfunxtableyardstick